Training materials
Contributors: Alexandre Cormier or Alireza Khanteymoori or Alvaro Gonzalez or Computational Biology and Bioinformatics at UCL... or Derek Wright or John Chilton or Mehmet Tekman or Stephan Nylinder
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
UCLouvain-CBIO/LSTAT2340
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UCLouvain-CBIO/WSBIM1207
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UCLouvain-CBIO/WSBIM2122
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UCLouvain-CBIO/WSBIM1322
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lessons, e-learning
Introduction to Data Management Practices - Data Management Plans
• beginnerData management FAIR data Open science CONVERGE Data Stewardship Wizard Data management plan -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Scripted analysis with R
• beginnerData management FAIR data Bioinformatics Data visualisation RStudio CONVERGE ggPlot