Training materials
Difficulty level: Intermediate
and Contributors: Alex Ostrovsky or Avans Hogeschool or Dr. Alexander Lex or Dr. Simon Tomlinson or Martin Krzywinski or Matthias Fahrner or Simon Bray or Stephen Taylor or Stéphanie Robin
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
hands-on tutorial
DIA Analysis using OpenSwathWorkflow
•• intermediateProteomics DIA -
hands-on tutorial
Statistical analysis of DIA data
•• intermediateProteomics DIA -
hands-on tutorial
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook