Training materials
Difficulty level: Intermediate
and Contributors: Alex Ostrovsky or Anne-Françoise Adam-Blondon or Célia Michotey or David Castillo or Erwan Le Floch or Simon Gladman or Stéphanie Robin
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Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• intermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
Documentation, Exercise, Handout, Scripts
3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)
•• intermediateHi-C