Training materials
Target audience: Students
and Resource type: hands-on tutorial
and Contributors: John Sundh or Dr. Nils Gehlenborg or Lounès Chikhi or Melanie Föll or Stéphanie Robin
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hands-on tutorial
Genome Assembly Quality Control
•• intermediateSequence assembly Assembly assembly quality control -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
DIA Analysis using OpenSwathWorkflow
•• intermediateProteomics DIA -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
hands-on tutorial
Statistical analysis of DIA data
•• intermediateProteomics DIA -
hands-on tutorial
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
hands-on tutorial
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free
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