Training materials
Keywords: Data analysis or SQL or assembly
and Contributors: John Sundh or Barbara Kozlikova or Dr. Roland Schwarz or Helena Rasche or Timothy J. Griffin
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
Advanced SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
hands-on tutorial
SQL Educational Game - Murder Mystery
•• intermediateSoftware engineering Foundations of Data Science SQL game jupyter-notebook -
hands-on tutorial
Introduction to SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
Training materials
NBIS Reproducible research course