Training materials
Difficulty level: Intermediate
and Licence: Creative Commons Attribution 4.0 International
and Contributors: John Sundh or Bérénice Batut or David Bouyssié or Dr. Stephen David Laycock or James Johnson or John Chilton or Wolfgang Maier
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hands-on tutorial
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• intermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
Workflow Reports
•• intermediateUsing Galaxy and Managing your Data workflows -
hands-on tutorial
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19
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