Training materials
Difficulty level: Intermediate
and Contributors: Federico Bianchini or Alvaro Gonzalez or Avans Hogeschool or Stephen Taylor or Wolfgang Maier or Wolmar Nyberg Åkerström
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hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediatevariant-analysis virology -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateassembly covid19 -
hands-on tutorial
Hands-on for 'SQL with R' tutorial
•• intermediatedata-science SQL R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediatedata-science SQL Python jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Advanced CLI in Galaxy' tutorial
•• intermediatedata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'SQL Educational Game - Murder Mystery' tutorial
•• intermediatedata-science game SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediatesequence-analysis covid19 -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis