Training materials
Difficulty level: Beginner or Not specified
and Contributors: @posit-pbc or Célia Michotey or Pavankumar Videm or Pratik Jagtap or Thomas Denecker
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hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-RNA interactome data analysis
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
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hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Small Non-coding RNA Clustering using BlockClust
• beginnerTranscriptomics -
hands-on tutorial
EncyclopeDIA
• beginnerProteomics DIA -
hands-on tutorial
Metaproteomics tutorial
• beginnerProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
slides
Slides for 'Introduction to metatranscriptomics' tutorial