Training materials
Scientific topics: Transcriptome
and Content provider: GTN
and Contributors: Björn Grüning or CRUK CI Bioinformatics Core or Helena Rasche or John Davis or Pedro Fernandes or Rob Finn or Wolmar Nyberg Åkerström
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq