Training materials
Content provider: GTN
and Contributors: Andrea Argentini or Eija Korpelainen or Emily Angiolini or Gautam Vallabha or Gildas Le Corguillé or James Johnson or Ms. Sejal Modha or Prof. Tom Freeman or Teaching materials at the Harvard Chan Bioinfor...
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hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
hands-on tutorial
EncyclopeDIA
• beginnerProteomics DIA -
hands-on tutorial
Metaproteomics tutorial
• beginnerProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Galaxy Installation with Ansible
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat