Training materials
Content provider: GTN
and Contributors: @posit-pbc or Allegra Via or Daniel Faria or Gildas Le Corguillé or Jean-François Dufayard or Stéphanie Robin or carpentries-incubator
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Galaxy Installation with Ansible
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat
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