Training materials
Authors: Gallantries: Bridging Training Communities in L...
and Contributors: Emily Angiolini or Erwan Corre or Helena Rasche or Niclas Jareborg or Prof. Michael J E Sternberg or Prof. Tom Freeman or Rafael C Jimenez or rstudio::conf(2022)
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hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
CLI Educational Game - Bashcrawl
•• intermediateSoftware engineering Foundations of Data Science bash game jupyter-notebook -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
slides
Circos
• beginnerVisualisation -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis