Training materials
Authors: Bérénice Batut
and Contributors: Bang Wong or Bioinformatics, Rockefeller University or Björn Grüning or Celia van Gelder or Donny Vrins or Dr. A.J. Pretorius or Dr. Simon Andrews or Fotis E. Psomopoulos or Jamie Edwards or Jyoti Khadake or Manimozhiyan Arumugam or Marek Vrbacky or Saskia Hiltemann or Stephen Taylor
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Teaching experiences
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Set up a Galaxy for Training
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Data source integration
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Creating Interactive Galaxy Tours
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Creating content in Markdown
• beginnerContributing to the Galaxy Training Material