Training materials
Authors: Bérénice Batut
and Contributors: Andrea Argentini or Eija Korpelainen or Emma Leith or Espen Aberg or Florian Heyl or John "Scooter" Morris or Martin Krzywinski or Martina Kutmon or Mateusz Kuzak or Patricia Palagi or Prof. Tom Freeman or Saskia Hiltemann or Software Carpentry
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Set up a Galaxy for Training
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Data source integration
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Creating Interactive Galaxy Tours
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Creating content in Markdown
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Tools, Data, and Workflows for tutorials
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Creating a new tutorial
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Running the GTN website locally
• beginnerContributing to the Galaxy Training Material
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