Training materials
Scientific topics: Software engineering or Transcriptome
and Authors: Korbinian Bösl or Laura Biggins or Manuel Corpas or Nicola Soranzo or carpentries-incubator or shiltemann
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Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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carpentries-incubator/scrna-seq-analysis
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carpentries-incubator/bioc-rnaseq
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hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
slides
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy -
slides
Tool Dependencies and Conda
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
Introduction to R
• beginnerSoftware engineering R programming Babraham Institute