Training materials
Authors: Jessica Kirkpatrick krkptrc2@illinois.edu or Malachi Griffith or Martin Morgan or Nicola Soranzo or Pratik Jagtap or abretaud
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hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
slides
Galactic Database
• beginnerGalaxy Server administration -
slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
mtmorgan/HCABiocTraining
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hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq