Training materials
Related resources: Input datasets
and Authors: Jessica Kirkpatrick krkptrc2@illinois.edu or Kathi Zarnack or Laura Cooper or Nicola Soranzo or bgruening or moheydarian
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Variant Analysis - Exome sequencing data analysis
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Tutorial
ChIP-Seq data analysis - Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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Tutorial
Transcriptomics - Reference-based RNA-Seq data analysis
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Tutorial
Transcriptomics - De novo transcriptome reconstruction with RNA-Seq
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Tutorial
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
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Tutorial
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
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Tutorial
Proteomics - Secretome Prediction