Training materials
Include archived: true
and Authors: Jeff Xia or Jessica Kirkpatrick krkptrc2@illinois.edu or Malachi Griffith or Maria Lehtivaara or Melanie Föll or Nicola Soranzo or St├®phane Plaisance
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slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
slides
Galactic Database
• beginnerGalaxy Server administration -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA