Training materials
Authors: Jared Simpson or Eija Korpelainen or Maria Victoria . or Julie Sullivan or Friederike Ehrhart or nekrut or Bernardo Clavijo or abretaud or Lars Juhl Jensen or Anne Segonds-Pichon
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Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
Slides
Development in Galaxy - Prerequisites for building software/conda packages
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STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation -
Tutorial
Variant Analysis - Calling very rare variants
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Tutorial
Variant Analysis - Calling variants in diploid systems
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Tutorial
Variant Analysis - Calling variants in non-diploid systems
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Tutorial
Introduction to Galaxy Analyses - NGS data logistics
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Tutorial
Transcriptomics - Reference-based RNAseq data analysis (long)
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Tutorial
Assembly - Unicycler Assembly