Training materials
Target audience: Students
and Authors: Helen Brown or Manuel Corpas or Marta Lloret Llinares or Martin Čech or Mateo Boudet or Mélanie Petera or The Carpentries
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hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
slides
Mass spectrometry: LC-MS preprocessing - advanced
• beginnerMetabolomics -
hands-on tutorial
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Virtual Environments For Software Development
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Conda Environments For Software Development
•• intermediateSoftware engineering Foundations of Data Science conda jupyter-notebook -
hands-on tutorial
Python - Testing
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
RNA-Seq analysis with AskOmics Interactive Tool
• beginnerTranscriptomics -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook