Training materials
Difficulty level: Beginner
and Authors: Erwan Corre or Jessica Kirkpatrick krkptrc2@illinois.edu or Maria Doyle or Marta Lloret Llinares or Praveen Kumar or rstudio::conf(2022)
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Visualization of RNA-Seq results with Volcano Plot
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Video
FAIR software tools
• beginnerSoftware engineering FAIR software tools Software -
Video
Making cohort data FAIR
• beginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards -
Video
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?
• beginnerData management FAIR data Health data Open science
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