Training materials
Contributors: Helena Rasche
and Authors: Erwan Corre or Jessica Kirkpatrick krkptrc2@illinois.edu or Lucille Delisle or Malachi Griffith or NBIS - National Bioinformatics Infrastructure S... or Nathan Dunn or Nicola Soranzo
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hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Creating a new tutorial
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
hands-on tutorial
Performant Uploads with TUS
• beginnerGalaxy Server administration -
hands-on tutorial
External Authentication
• beginnerGalaxy Server administration authentication -
hands-on tutorial
Galaxy Tool Management with Ephemeris
• beginnerGalaxy Server administration git-gat tools -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote
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