Training materials
Authors: Erasmus+ Programme or Erwan Corre or Mira Kuntz
and Contributors: Dr. Nils Gehlenborg or Dr. Simon Li or Helena Rasche or Laura Leroi
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slides
Galaxy and Celery
• beginnerGalaxy Server administration -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Setting up Celery Workers for Galaxy
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Genome Assembly Quality Control
•• intermediateSequence assembly Assembly assembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
Mapping Jobs to Destinations using TPV
• beginnerGalaxy Server administration git-gat jobs -
hands-on tutorial
Running Jobs on Remote Resources with Pulsar
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Quality Control
• beginnerSequence analysis
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