Training materials
Resource type: hands-on tutorial
and Authors: Ekaterina Polkh or Maria Lehtivaara or Marius van den Beek or Pavankumar Videm or Pedro Fernandes or Simon Gladman
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hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Reference Data with Data Managers
• beginnerGalaxy Server administration -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Formation of the Super-Structures on the Inactive X
• beginnerEpigenomics ChIP-seq Epigenetics