Training materials
Authors: Egon Willighagen or Gary Bader or Jared Simpson or Mark Fernandes or Wendi Bacon
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slides
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerSingle Cell -
Tutorial
Registering SwissLipids identifiers in Wikidata
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tutorial
Registering Datasets in Wikidata
• beginnerFAIR data Wikidata -
Downloading all currently released BridgeDb identifier mapping databases
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slides
Single-cell Formats and Resources
• beginnerSingle Cell -
hands-on tutorial
Creating a Special Interest Group
• beginnerGalaxy Community Building -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Importing files from public atlases
• beginnerSingle Cell data import data management -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication