Training materials
Difficulty level: Intermediate
and Authors: Egon Willighagen or Emma Leith or Gary Van Domselaar or Janick Mathys or Wolfgang Maier or abretaud
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediatevariant-analysis virology -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateassembly covid19 -
hands-on tutorial
Hands-on for 'metaQuantome 3: Taxonomy' tutorial
•• intermediateproteomics microbiome -
hands-on tutorial
Hands-on for 'metaQuantome 2: Function' tutorial
•• intermediateproteomics microbiome -
hands-on tutorial
Hands-on for 'metaQuantome 1: Data creation' tutorial
•• intermediateproteomics microbiome -
hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediatesequence-analysis covid19 -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF
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