Training materials
Authors: Dannon Baker or Erwan Corre or Saskia Hiltemann
and Contributors: Anthony Bretaudeau or Dr. Roy Ruddle or Dr. Scooter Morris or Erasmus+ Programme or Nicola Soranzo or posit-conf-2023
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
slides
Circos
• beginnerVisualisation -
slides
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy
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