Training materials
Authors: Daniel Blankenberg or Gary Bader or Helen Brown or Jonathan Karr or Kathi Zarnack or Maria Lehtivaara or Mathieu Bourgey
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Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
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hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell RNA Datasets' tutorial
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hands-on tutorial
Hands-on for 'PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis' tutorial
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hands-on tutorial
Hands-on for 'Text-mining with the SimText toolset' tutorial
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hands-on tutorial
Peptide Library Data Analysis
•• intermediateProteomics -
hands-on tutorial
Hands-on for 'Machine Learning Modeling of Anticancer Peptides' tutorial
•• intermediateproteomics ML cancer -
hands-on tutorial
Hands-on for 'NGS data logistics' tutorial
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slides
Slides for 'Reference Data with CVMFS' tutorial
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL