Training materials
Authors: Daniel Blankenberg or Eija Korpelainen or Jessica Kirkpatrick krkptrc2@illinois.edu or Mehmet Tekman or Michelle Brazas or Mijke Jetten or The Carpentries or joachimwolff
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Gearing towards production
• beginnerGalaxy Server administration -
Presentation
Workshop FAIR & Data stewardship for the ITN NUTRIOME project (2024)
• beginnerNutritional science Data management FAIR data Data handling Analysis data stewardship data life cycle Training FAIR Nutrition -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
ekorpela/cloud-vm-workshop
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Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics