Training materials
Difficulty level: Intermediate
and Authors: Brandon Pickett or Christine Staiger or James Johnson or Jan Slifka or Javi Conejero or Saskia Hiltemann
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
hands-on tutorial
Hands-on for 'VGP assembly pipeline' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'VGP assembly pipeline - short version' tutorial
•• intermediateassembly pacbio eukaryote VGP -
hands-on tutorial
Hands-on for 'Proteogenomics 1: Database Creation' tutorial
•• intermediateproteomics proteogenomics -
hands-on tutorial
Hands-on for 'Proteogenomics 2: Database Search' tutorial
•• intermediateproteomics proteogenomics -
hands-on tutorial
Hands-on for 'Proteogenomics 3: Novel peptide analysis' tutorial
•• intermediateproteomics proteogenomics -
hands-on tutorial
Hands-on for 'Workflow Reports' tutorial
•• intermediategalaxy-interface workflows -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
course materials
Introduction to Persistent Identifiers
•• intermediateData management system relevant metadata for data PID metadata Python API pyhandle Persistent Identifiers -
Galaxy RNA-Seq course
•• intermediate