Training materials
Difficulty level: Beginner
and Authors: Bazante Sanders or Eija Korpelainen or Jared Simpson or Jeff Xia or Julie Sullivan or Maria Levchenko or Maria Victoria . or Marius van den Beek
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Performant Uploads with TUS
• beginnerGalaxy Server administration -
hands-on tutorial
Running Jobs on Remote Resources with Pulsar
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Python - Try & Except
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Python - Files & CSV
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook