Training materials
Keywords: Galaxy or Python or git-gat or microgalaxy
and Authors: Bazante Sanders or Björn Grüning or Jan Slifka or Terri Attwood or allegra.via Via
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Mapping Jobs to Destinations using TPV
• beginnerGalaxy Server administration git-gat jobs -
hands-on tutorial
Galaxy Monitoring with Reports
• beginnerGalaxy Server administration ansible broken git-gat monitoring -
course materials, Training materials, Slides
Galaxy Proteomics workshop Prague 2018
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Introduction to Biopython
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Using R with Python
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Searching data using Python
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