Training materials
Authors: Bazante Sanders or Biocore@CRG or Gary Van Domselaar or Malachi Griffith or Michelle Brazas or pajanne
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
biocorecrg/CRG_RIntroduction_2021
-
biocorecrg/CRG_R_tidyverse_2021
-
biocorecrg/SIB_course_nextflow_Nov_2021
-
biocorecrg/ELIXIR_containers_nextflow
-
biocorecrg/RNAseq_course_2019
-
biocorecrg/CoursesCRG_Containers_Nextflow_May_2022
-
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Python - Subprocess
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook