Training materials
Contributors: Helena Rasche
and Authors: Anton Nekrutenko or Brian Haas or Lars Juhl Jensen or Laura Cooper or Nicola Soranzo or carpentries-incubator
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hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
hands-on tutorial
External Authentication
• beginnerGalaxy Server administration authentication -
hands-on tutorial
Galaxy Tool Management with Ephemeris
• beginnerGalaxy Server administration git-gat tools -
hands-on tutorial
Understanding Galaxy history system
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Searching Your History
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration features
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