Training materials
Authors: Anton Nekrutenko or Bastian Schiffthaler @bastian or Donny Vrins or Jared Simpson or Jessica Kirkpatrick krkptrc2@illinois.edu or Mehmet Tekman or Melanie Föll
-
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
hands-on tutorial
DIA Analysis using OpenSwathWorkflow
•• intermediateProteomics DIA -
hands-on tutorial
Statistical analysis of DIA data
•• intermediateProteomics DIA -
hands-on tutorial
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
hands-on tutorial
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free