Training materials
Authors: Anthony Bretaudeau or Eija Korpelainen or Teresa Attwood
and Contributors: Anne Pajon or Björn Grüning or Celia van Gelder or Erik Hjerde or Erwan Corre or Gildas Le Corguillé or Manimozhiyan Arumugam or Marek Suchanek or Marek Vrbacky or Ms. Yo Yehudi or Nils Peder Willassen or Stéphanie Legras
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
slides
Tool Shed: sharing Galaxy tools
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
Options for using Galaxy
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Quality Control
• beginnerSequence analysis
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