Training materials
Authors: Anthony Bretaudeau or Cameron Hyde or NU Knight Lab
and Contributors: Alexandre Cormier or Celia van Gelder or Emily Angiolini or Erasmus+ Programme or Martin Strauch or Prof. Richard Baldock or Prof. Tom Freeman
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
SQL Educational Game - Murder Mystery
•• intermediateSoftware engineering Foundations of Data Science SQL game jupyter-notebook -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote -
hands-on tutorial
Quality Control
• beginnerSequence analysis
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