Training materials
Authors: Anthony Bretaudeau or Bérénice Batut or Klemens Fröhlich or Maria Doyle
and Contributors: Emily Angiolini or Erwan Corre or Laura Leroi or Marek Vrbacky or Matthias Fahrner or Oliver Davis or Prof. Tom Freeman
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis