Training materials
Authors: Anthony Bretaudeau or Anup Kumar or Florian Christoph Sigloch or Jan Slifka or Melanie Föll or Samaha, Georgina (orcid: 0000-0003-0419-1476) or Wendi Bacon
-
slides
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerSingle Cell -
hands-on tutorial
Genome annotation with Helixer
•• intermediateGenome Annotation eukaryota helixer jbrowse1 -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
hands-on tutorial
Creating a Special Interest Group
• beginnerGalaxy Community Building -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Importing files from public atlases
• beginnerSingle Cell data import data management -
hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication