Training materials
Include archived: true
and Authors: Anna Syme or Dayane Araujo or Delphine Lariviere or Erwan Corre or Jessica Kirkpatrick krkptrc2@illinois.edu or Mathieu Bourgey or Simon Bray
-
Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Hands-on for 'Essential genes detection with Transposon insertion sequencing' tutorial
-
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Contributing to BioBlend as a developer
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants