Training materials
Scientific topics: Whole genomes
and Authors: Anna Syme or Clemens Blank or Egon Willighagen or Gary Bader or Simon Gladman or bioinformatics.ca or shiltemann
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bioinformaticsdotca/IDE_2024
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hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene