Training materials
Difficulty level: Beginner
and Authors: Anika Erxleben or Anthony Bretaudeau or Jessica Kirkpatrick krkptrc2@illinois.edu or Our core educator team can be found on our cour... or Sergio Martínez Cuesta or allegra.via Via
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FREE online course
A Practical Guide for SARS-CoV-2 Whole Genome Sequencing Join now
• beginnerSequencing Best Practices quality control Genomics Metagenomics Genomic data library preparation sars-cov-2 covid-19 surveillance -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Functional annotation of protein sequences' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
FREE online course
Making sense of genomic data: COVID-19 web-based bioinformatics
• beginnerbioinformatics NGS bioinformatics Next generation sequencing data analysis covid-19 sars-cov-2 coronavirus data-analysis data visualization genomics Genomic data pipelines Galaxy nexstrain -
FREE online course
The Power of Genomics to Understand the COVID-19 Pandemic
• beginnercoronavirus covid-19 sars-cov-2 mutations Variant calling Sequencing pandemic surveillance genomics public health Genomic data -
Training materials
Introduction to GitHub
• beginnerGitHub Reproducibility -
Training materials
Beginners introduction to Git and GitHub
• beginnerGit GitHub control version Reproducibility
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