Training materials
Authors: Andrew Mason or Anthony Bretaudeau or Anup Kumar or David Wishart or Erwan Corre or Laura Cooper or Patricia Palagi
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hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
Train-the-Trainer: putting it all together
• beginnerTeaching and Hosting Galaxy training -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
hands-on tutorial
FAIRification of an RNAseq dataset
•• intermediateFAIR clinical data -
hands-on tutorial
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerBioimaging FAIR REMBI -
hands-on tutorial
FAIR Bioimage Metadata
• beginnerFAIR bioimage Bioimage Metadata -
Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
Video
RDMbites | Bioimage metadata – REMBI
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Video
RDMbites | Bioimage metadata – REMBI: study