Training materials
Authors: Andrea Argentini or Anthony Bretaudeau or Gildas Le Corguillé or Marek Vrbacky
and Contributors: Björn Grüning or Dr. Scooter Morris or Erwan Corre or Jamie Edwards or Manimozhiyan Arumugam or Marek Suchanek or Nicola Mulder or Prof. Frederic Fol Leymarie or Rafael C Jimenez or Sonika Tyagi or Workflow4Metabolomics core team
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Quality Control
• beginnerSequence analysis
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