Training materials
Authors: Allegra Via or Bazante Sanders or Dave Clements or Jessica Kirkpatrick krkptrc2@illinois.edu or Marius van den Beek or Obi Griffith or stortebecker
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
Train-the-Trainer: putting it all together
• beginnerTeaching and Hosting Galaxy training -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Motivation and Demotivation
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Training techniques to enhance learner participation and engagement
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Assessment and feedback in training and teachings
• beginnerTeaching and Hosting Galaxy training