Training materials
Resource type: hands-on tutorial
and Authors: Alexander Botzki or Marius van den Beek or Nate Coraor or Nicola Soranzo or erasche
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hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq