Training materials
Authors: Alexander Botzki or Gary Bader or Jonathan Karr or Patricia Palagi or Samaha, Georgina (orcid: 0000-0003-0419-1476) or The Gulbenkian Training Programme in Bioinforma...
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e-learning
Data Management and Writing a Data Management Plan
• beginnerData management -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Documentation, Exercise, Handout, Scripts
IBIP19 - Integrative Biological Interpretation using Proteomics (2019)
•• intermediateProteomics -
Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
•• intermediateGenomics -
Documentation, Exercise, Handout, Scripts
ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)
•• intermediateRNA-Seq Genomics RNA -
Documentation, Exercise, Handout, Scripts
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
•• intermediatePopulation Genomics Phylogenetics -
Documentation, Exercise, Handout, Scripts
PDA19 - Proteomics Data Analysis (2019)
•• intermediateProteomics Biological databases Mass spectrometry data -
Documentation, Exercise, Handout, Scripts
ELB19F - Entry level Bioinformatics (First course in 2019)
• beginnerBioinformatics Sequencing