Training materials
Authors: Aidan Budd or Geert van Geest or Jeroen Beliën or Patricia Palagi or Personalized Health Informatics Group
and Node: Netherlands or Switzerland
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
Submitting, Finding and Downloading Raw Sequencing Data with ENA
• beginnerFAIR data Metadata Data submission -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
NGS - Quality Control, Alignment, Visualisation
• beginnertraining genes and genomes next generation sequencing environmental science medicine and health -
NGS - Genome Variant Analysis
• beginnermedicine and health,next generation sequencing,training,agriculture,environmental science,medicine and health medicine and health,next generation sequencing,training,agriculture,environmental science,rémy bruggmann group,medicine and health -
Long-read Sequence Analysis
• beginnertraining genes and genomes next generation sequencing environmental science medicine and health rémy bruggmann group -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology
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