Training materials
Target audience: Students
and Authors: Aidan Budd or Data Carpentry or Instituto Gulbenkian de Ciência or Martin Čech or Mikael Linden or Wendi Bacon
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slides
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerSingle Cell -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Importing files from public atlases
• beginnerSingle Cell data import data management -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
hands-on tutorial
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management
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