Training materials
Authors: Aidan Budd or Celia van Gelder or Dave Clements or Egon Willighagen or Jared Simpson or Wendi Bacon or bioinformatics.ca
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
bioinformaticsdotca/BMB_2024
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bioinformaticsdotca/AMB_2024
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bioinformaticsdotca/IDE_2024
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Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training